Bioconductor Volcano plot

Showing : Volcano plot • reset

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604

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DiffBind volcano plot software error

4.5 years ago rbronste ▴ 60

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947

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volcano plot rna seq

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by adeler001 • 0

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1.3k

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Volcano plot Parameters

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by Sanches • 0

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1.2k

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limma volcano plot

updated 7.0 years ago by Gordon Smyth 50k • written 7.0 years ago by yul • 0

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1.7k

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volcano plot edgr

7.2 years ago elena.capel ▴ 10

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1.3k

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microarray limma volcano plot

updated 9.5 years ago by Gordon Smyth 50k • written 9.5 years ago by jyoti_cad • 0

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Comment: fgsea significant result by Chris • 0

Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…

Answer: Handling multiple differential expression comparisons by Michael Love 41k

It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…

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Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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